web-python-console A web based Python console powered by Pyodide and ImJoy. It allows you to run Python code in the browser, and you can also directly execute code / python file from URL.

YA-game-of-life Yet another game of life implemention.

cmd2func Convert command to callable Python object.

BioTMCourse Codes about the BioTM Course.

easy-node A general visual node editor for Python.

funcdesc

Cellular-Automaton 一个用来存放各种元胞自动机的仓库

chrome-python A Chrome extension that provides a Python console.

douban_movie_recommander 根据个人豆瓣上的“想看”页面获取所有，并从中随机推荐

executor-http

j2pbs Manage PBS jobs with json file format.

okite A simple, user-friendly RPC package for Python

pubmed_xml_analyze 用python解析来自pubmed的xml数据

pywonderland Render beautiful images or animate interesting algorithms in mathematics with Python.

RLL-Y2H Tools for processing RLL-Y2H data.

bioimageio-chatbot Chatbot to retrieve information to response to users' query about the BioImage Model Zoo.

bramin

chain-thought

Course-Algorithms-in-Bioinformatics Codes about the Algorithms in Bioinformatics course.

double_index_spliter Split double indexed fastq file.

enformer_utils

executor-view Web interface for executor HTTP server.

fauux.neocities.colorscheme

ScrapyDoubanImageDownloader 用来下载豆瓣相册的爬虫，使用scrapy框架编写

slides-deeplearning-microscopy

sunmao-core

Awesome-PanDiab-Database A curated list of publicly available datasets and resources for diabetes and pancreas research.

BacterialImg

bioconda-recipes Conda recipes for the bioconda channel.

bioengine-model-runner

bioimage.io Website for the BioImage Model zoo -- a model zoo for bioimage analysis.

bioimageio-model-interface

biology-browser-agent

BioStatisticsCourse

caper Cromwell/WDL wrapper for Python

computationbook Example code for Understanding Computation

cookiecutter-pypackage Cookiecutter template for a Python package.

CoolClip

CV

D3-bubble-chart-example Example D3.js GO enrichment result bubble chart

davidapi A ruby wrapper for a few of the DAVID API functions for functional gene annotation (http://david.abcc.ncifcrf.gov/)

DLO-HIC-AnalysisTools DLO-HIC-AnalysisTools

dracula Javascript layout and representation of connected graphs.

ep2vec

FIP-tutorial-with-imgflow

frp A fast reverse proxy to help you expose a local server behind a NAT or firewall to the internet.

gcMapExplorer Genome Contact Map Explorer - gcMapExplorer. Visit:

GCSCG The static website generator for our laboratory

HiCExplorer HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

hw01 高性能并行编程与优化 - 第01讲回家作业

imagej.js ImageJS--Image analysis in the browser with ImageJ

imjoy-docs ImJoy Docs: Interactive documentation powered by ImJoy and docsify

imjoy-mosaic Mosaic layout for ImJoy

istdeco

json-tutorial 从零开始的 JSON 库教程

jupyter My jupyterlite site

jupyter.imjoy.io JupyterLite for ImJoy

kaibu Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.

learn-DNN

learn-TS

luckyegg

luzhang

miniMDS

mrbios

Nanguage.github.io GitHub blog

nuc_dynamics Particle dynamics and simulated annealing for chromosome structure calculation

OnTAD An Optimized Nested TAD caller for Hi-C data

PL-course

polychrom A new version of openmm-polymer

probelib Python library for probe design.

pyflow Dataflow based workflow framework

qtpyeditor An simple editor in pure Python-Qt binding for both PyQt5 and PySide2 to solve the problem that PySide2 lacks QScintilla bindings. This package is developed by PyMiner developing team.

Regeneration

rna-seq-qc Rna-seq pipeline, From FASTQ to differential expression analysis...

ryvencore-qt Qt frontend for ryvencore - Python library for building visual node editors

sandspiel Creative cellular automata browser game

scHiCTools a computational tool for analyzing single cell Hi-C data

seq_interval Interval operations for sequencing data.

Si-C Single-Cell Chromosome Conformation Calculator

SimpleHTTPServerWithUpload Simple HTTP Server With Upload written in Python 3

simucaller An useful tool for fMRI data time series analyze

SnailProbe

spateo-release Spatiotemporal modeling of spatial transcriptomics

strawC

Extract data quickly from Juicebox via straw