V2EX n50

N50

Definition / 释义

N50(常用于基因组/转录组组装)指一种衡量组装连续性(contiguity)的统计指标:把所有 contig/scaffold 按长度从长到短排序并累加,当累计长度达到总组装长度的 50% 时,对应的那条序列长度就是 N50。一般来说,N50 越大,组装越“连贯”(但不等于越准确;仍需结合错误率、完整性等指标)。

Pronunciation / 发音

/n ffti/

Examples / 例句

The assembly has an N50 of 2 megabases.
这个组装的 N50 是 2 兆碱基(Mb)。

After polishing and removing contaminants, the genome’s N50 increased, but we still checked BUSCO completeness to avoid overestimating quality.
在校正(polishing)并去除污染序列后,基因组的 N50 提高了,但我们仍用 BUSCO 完整性来核验,避免高估组装质量。

Etymology / 词源

N50 是一种“命名式”缩写:N 常被理解为 number/length statistic 的标记,50 表示阈值为 **50%**。它源自基因组学与生物信息学中对序列长度分布进行概括的需求,后来也衍生出 N90、N75 等类似指标。/p>

Related Words / 相关词

Literary Works / 文学与著作例证

  • Pevzner, P. A. & Compeau, P. Bioinformatics Algorithms: An Active Learning Approach(生物信息学算法教材中常讨论组装评估指标,包含对 N50 等统计量的使用语境)
  • Practical guides / methods books on genome assembly(如面向科研实践的基因组组装方法书与课程讲义中,N50 常作为核心质量指标之一出现)
  • Assembly tool papers(例如短读长读组装软件的论文与说明文档中,通常以 N50 报告组装结果的连续性表现)
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